publications

List of publications in reverse chronological order. See up-to-date citation information on [Google Scholar].

2020

  1. Article
    Partitioned integrators for thermodynamic parameterization of neural networks
    Leimkuhler, Benedict, Matthews, Charles, and Vlaar, Tiffany
    Foundations of Data Science 2020
    DOI arXiv

2019

  1. Article
    Bayesian Modeling Reveals Ultrasensitivity Underlying Metabolic Compensation in the Cyanobacterial Circadian Clock
    Hong, Lu, Lavrentovich, Danylo O, Chavan, Archana, Leypunskiy, Eugene, Li, Eileen, Matthews, Charles, LiWang, Andy, Rust, Michael J, and Dinner, Aaron R
    BioRxiv 2019
    DOI
  2. Article
    Langevin Markov Chain Monte Carlo with stochastic gradients
    Matthews, Charles, and Weare, Jonathan
    2019
    arXiv
  3. Article
    MIST; a simple and efficient molecular dynamics abstraction library for integrator development
    Bethune, Iain, Banisch, Ralf, Breitmoser, Elena, Collis, Antonia BK, Gibb, Gordon, Gobbo, Gianpaolo, Matthews, Charles, Ackland, Graeme J, and Leimkuhler, Benedict J
    Computer Physics Communications 2019
    DOI arXiv
  4. Article
    Transferability of Operational Status Classification Models Among Different Wind Turbine Types
    Trstanova, Z, Martinsson, A, Matthews, C, Jimenez, S, Leimkuhler, B, Van Delft, T, and Wilkinson, Michael
    In Journal of Physics; Conference Series 2019
    DOI arXiv

2018

  1. Article
    Ensemble preconditioning for Markov chain Monte Carlo simulation
    Leimkuhler, Benedict, Matthews, Charles, and Weare, Jonathan
    Statistics and Computing 2018
    DOI
  2. Article
    Simulating the stochastic dynamics and cascade failure of power networks
    Matthews, Charles, Stadie, Bradly, Weare, Jonathan, Anitescu, Mihai, and Demarco, Christopher
    2018
    arXiv
  3. Article
    Umbrella sampling; A powerful method to sample tails of distributions
    Matthews, Charles, Weare, Jonathan, Kravtsov, Andrey, and Jennings, Elise
    Monthly Notices of the Royal Astronomical Society 2018
    DOI arXiv

2016

  1. Article
    Efficient molecular dynamics using geodesic integration and solvent–solute splitting
    Leimkuhler, Benedict, and Matthews, Charles
    Proceedings of the Royal Society A; Mathematical, Physical and Engineering Sciences 2016
    DOI
  2. Article
    The computation of averages from equilibrium and nonequilibrium Langevin molecular dynamics
    Leimkuhler, Benedict, Matthews, Charles, and Stoltz, Gabriel
    IMA Journal of Numerical Analysis 2016
    DOI arXiv

2015

  1. Book
    Molecular Dynamics with Deterministic and Stochastic Numerical Methods
    Leimkuhler, Ben, and Matthews, Charles
    2015
    DOI

2014

  1. Article
    On the long-time integration of stochastic gradient systems
    Leimkuhler, B, Matthews, C, and Tretyakov, MV
    Proceedings of the Royal Society A; Mathematical, Physical and Engineering Sciences 2014
    DOI arXiv

2013

  1. Article
    Robust and efficient configurational molecular sampling via Langevin dynamics
    Leimkuhler, Benedict, and Matthews, Charles
    The Journal of chemical physics 2013
    DOI arXiv
  2. Thesis
    Error in the invariant measure of numerical discretization schemes for canonical sampling of molecular dynamics
    Matthews, Charles
    2013
    PDF
  3. Article
    Rational construction of stochastic numerical methods for molecular sampling
    Leimkuhler, Benedict, and Matthews, Charles
    Applied Mathematics Research eXpress 2013
    DOI arXiv